Other useful tools

img2vid

A light weight MATLAB library for making exsiting images to videos.

MATLAB

AMF

An adaptive filter for confocal-type microscopy to remove isolate pixels. Confocal type images often exhibit isolated pixels (1×1 ~ 5×5) with extremely bright values caused by voltage instability or dead or hot pixels. The magnitudes of these pixels are approximately 5 to 100 times higher than the normal intensity amplitudes of the biostructure. These isolated pixels are ill-suited for the post analyse or processing.

Java ImageJ-plugin

t-varianceJ

A simple FIJI/ImageJ plugin for t-axial variance calculation assisting in calcium signal profiling. It will highlight the regions that have calcium signal transients.

Java ImageJ-plugin

Palette

Merge channels: A tool for multi-color 2D or 3D imaging. This tool can adjust the 4 color channel components (RGB), the GAIN (the brightness to display) and also the gamma (adjust the histogram to make images more 'naturally').

MATLAB

Simulation for adaptive optics

Simulation for sensorless adaptive optics (Confocal microscopy, Modal method). The simulation generates the aberrated PSF on the pupil with Zernike polynomial 5-22 orders, and corrects them with different method.

MATLAB

Web template

A pure clean web template (this website) adapted from 'modern business'.

Code